rs213214342 SNP Detail

Summary

• ID
  rs213214342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55475136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATGTCC CCTATTAGGC
  AGGACTACAT ATTGAAACCT TCTTTAAAAA GTAAACAAAA CCCCTGACAA ATAAACAAAC
  AACAACAGCA ACGGAATAGA AAGGAAGGGA GGGAGGAAGG ACCCCAGCAA CAGCACAAAT
  CAAATAGAAA ATAACACACT GGCAAGGATG TGAAGGAATT CCTAGCACAA GCACAGACTG
  S
  GGGAAGGGTG GGGGGGGGGG CGGCAATGTA AAATGATACA GAGGCTATAG AAATAGCATG
  TGGTTTGGTT TTTGTTTTTT TTTTAAATAT TTATTTATTT ATCTATTTAG AAAACTCAAA
  CACAGAATTG TACACGACCC AACAATTCTA CTTCTGGTGA GATTGCCAAA AGTTTTAAAA
  GCAGTAATTG TGCAAATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
ss361597481	MGP_WTSI_4_55488008	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
rs213214342					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361597481	MGP_WTSI_4_55488008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55475136 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Rr592486	regulatory region 592486	605 bp distal
Tssr41779	transcription start site region 41779	243 bp downstream