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rs213218482 SNP Detail
Summary
  • ID
    rs213218482
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:37695278 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGCCCCTGAG GTCTCGGCGT GGGGCCCAAG CGCCCGACGG
    TGCTACCCAC ACTGCTGTCC GCGGGTGCGC ACCGGCTTCG CTCTGGACAG TTGCGGGGTG
    Y
    CTAGGTGCTC CGCCTGAGCG AACTTGCTTG GGAATGCCCT GTAAAATGCA AATTAAAGCC
    GTGCCTAGGG GTTTCATAAC TCAAACAAGC CGTGCCCAC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320711452 CHEV_3_37540051 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs213218482 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:37695278 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13100 CpG island 13100 within coordinates
Gm42922 predicted gene 42922 Coding-Synonymous
Rr575523 regulatory region 575523 1039 bp distal
Rr575524 regulatory region 575524 within coordinates
Rr575525 regulatory region 575525 332 bp distal
Rr575526 regulatory region 575526 224 bp distal
Spry1 sprouty RTK signaling antagonist 1 Intron
Tssr28908 transcription start site region 28908 1436 bp downstream
Tssr28909 transcription start site region 28909 1217 bp downstream
Tssr28910 transcription start site region 28910 1186 bp downstream
Tssr28911 transcription start site region 28911 1165 bp downstream
Tssr28912 transcription start site region 28912 1143 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory