rs213227077 SNP Detail

Summary

• ID
  rs213227077
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37857827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGTGTC ACTCTCTGGA
  CAGTCTGCAT CACCTGCTTC AGTTACTGAC AACTTCAAAC TATTGATACC ATTTCCATGG
  TGGCTTTAAT ATTTGTCTTT TTATAATAAT CATATATGTT CCTCACTTTT TGTTGTTCTT
  TGGATGAAAG TTATAGTAGT AGGGCTAACC GTGTGTGTGT GTTTGTGTCT GTGTGTGTGT
  S
  TCACTTAAAC ACTCATCTAG TTTAAAGTTC AATTATTGAC AGGCTTGGTA GTGCACACTT
  TAATCCCAGC ACCAGGATGT ACCAGCCTGA TCTACCTAGT GAGTTCCAGG ACAGACAGAC
  ACACACACAC CCTCACACCC TCCTTTCTCC TCTCTCCTTT CTCTCTCTTC TCTCTCTCTA
  TCTCTCTCTC TCTCTCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400303200	MGP_WTSI_18_37884428	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213227077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400303200	MGP_WTSI_18_37884428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37857827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9937	CpG island 9937	967 bp proximal
Cpgi9938	CpG island 9938	1707 bp proximal
Gm37165	predicted gene, 37165	within coordinates
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	932 bp upstream
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	796 bp proximal
Tssr150727	transcription start site region 150727	947 bp upstream