rs213230035 SNP Detail

Summary

• ID
  rs213230035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76888624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTACTACC TCTTTTCTAG CTCTCCCTCA
  CTCGCTTGGC CGGATGAGAA GAGACAGGCT GGCCGGCCCG GGTCCTGACT TCTCTGCCTC
  AGACACAGTC CAAAATAAGT AACATATCTG CTCtttaaaa aaaaaaaaaa aaaaGCTCCC
  S
  TAATTTTGGT GAAAAAAAGA ATGTGATAAC ATTAAATTCA TTTTTAAGCt gtgtgtgtgt
  gtgcgtgtgc gtgtgcgtgt gtgtgtgtgt gtgtgAACAA AACAATCTAT ATAGACTTGA
  AAACAGTGCT CCTGTCGAAA TACTGAGCGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323754479	CHEV_11_76811300	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213230035					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76888624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3300	CpG island 3300	131 bp distal
Cpgi3301	CpG island 3301	372 bp proximal
Gm72068	predicted gene, 72068	within coordinates
Rr247222	regulatory region 247222	within coordinates
Rr366811	regulatory region 366811	within coordinates
Slc6a4	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	805 bp upstream
Tssr103121	transcription start site region 103121	797 bp upstream