rs213230151 SNP Detail

Summary

• ID
  rs213230151
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAATG GAAGCAGTGG
  TGGGTGCCCA CCTTGCTGGC TCTAGCCCTT GCTTCCCTCT GCTGGCCGAC CTTGGGAAGA
  TGACTCAACT TCTCTGATCT TTGATTATCA TATAAAATAA GCCTGTACTC AAGGTTGGCT
  GTGAGTACAA GCAGGGCATC AGGTGGAAGG GCCTGTGCTC CAGGCGGGTG CTCCAGGTAG
  G
  TGCTCCAGGC AGGTGCTCCA GGCAGGTGCT CCAGACGGGT GTTCAGTGGC TACTAGAAAA
  CAGCACTGAT GTGTCTGCCG TTACATTTCA AAAAAGAAGT CACCTGAGGC TTGGCTGGAC
  TCTGGACTCC TGTGTTTCAG TCCAGGTACA CTGTGTTTTC TAGAACAGAG ATTCTAAGAC
  TTCCCAAGAA GTCAGTGCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436708	MGP_WTSI_18_82752567	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213230151					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436708	MGP_WTSI_18_82752567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601300 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58829	predicted gene, 58829			1447 bp downstream
Mbp	myelin basic protein			Intron
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			490 bp proximal
Tssr152152	transcription start site region 152152			933 bp upstream
Tssr152153	transcription start site region 152153			961 bp upstream
Tssr152154	transcription start site region 152154			1075 bp upstream
Tssr152155	transcription start site region 152155			1113 bp upstream
Tssr152156	transcription start site region 152156			1186 bp upstream
Tssr152157	transcription start site region 152157			1237 bp upstream
Tssr152158	transcription start site region 152158			1294 bp upstream
Tssr152159	transcription start site region 152159			1324 bp upstream
Tssr152160	transcription start site region 152160			1374 bp upstream
Tssr152161	transcription start site region 152161			1391 bp upstream
Tssr152162	transcription start site region 152162			1407 bp upstream
Tssr152163	transcription start site region 152163			1432 bp upstream
Tssr152164	transcription start site region 152164			1472 bp upstream
Tssr152165	transcription start site region 152165			1525 bp upstream
Tssr152166	transcription start site region 152166			1591 bp upstream
Tssr152167	transcription start site region 152167			1606 bp upstream
Tssr152168	transcription start site region 152168			1641 bp upstream
Tssr152169	transcription start site region 152169			1702 bp upstream
Tssr152170	transcription start site region 152170			1783 bp upstream
Tssr152171	transcription start site region 152171			1843 bp upstream
Tssr152172	transcription start site region 152172			1950 bp upstream
Tssr152173	transcription start site region 152173			1973 bp upstream
Tssr152174	transcription start site region 152174			1991 bp upstream
Tssr154083	transcription start site region 154083			1042 bp downstream
Tssr154084	transcription start site region 154084			1066 bp downstream
Tssr154085	transcription start site region 154085			1338 bp downstream
Tssr154086	transcription start site region 154086			1893 bp downstream