rs213234234 SNP Detail

Summary

• ID
  rs213234234
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68911459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTCTGT CCCAACCATC
  ATTATCCTCA AACTCAGGTT AAAAGCCCAT TAAGGAAACT AAACCGCTCG GGATTAGGAA
  TTGCCGCATC CATTTAACAA CCCTTGCTAT TCCTTTCACT GTGTAACAAA GACAAATGCT
  ACTTATGAAC TAATTCCCCC ATAACGGTAA CTAGTTATCA CCAGCGAATC CTTTCTCCCA
  S
  TAGGAGCCCT GCTGGCCAAA TGGTTATTTA AACTCAACAC CTTTCAGTAG TGTCACTTAC
  ACAAAATAGT TCAAAAATCA TTGTTATTCA TAAATGGACT ACAAGGTTAA CTCAATAATC
  CCGGTTTCCT CGCTTTACCT GTAAACTCCA CATCCCAAGA TCAACACCCT GGTGGCTGGA
  AGAAGATGGA AAATAACTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313289	MGP_WTSI_3_68808048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213234234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313289	MGP_WTSI_3_68808048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68911459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	324 bp proximal
Ift80	intraflagellar transport 80	within coordinates
Rr397713	regulatory region 397713	362 bp upstream
Rr578107	regulatory region 578107	1152 bp distal
Rr578108	regulatory region 578108	within coordinates
Rr578109	regulatory region 578109	407 bp proximal
Rr578110	regulatory region 578110	876 bp proximal
Smc4	structural maintenance of chromosomes 4	612 bp upstream
Tssr901	transcription start site region 901	286 bp downstream
Tssr29506	transcription start site region 29506	585 bp upstream
Tssr29507	transcription start site region 29507	843 bp upstream
Tssr29508	transcription start site region 29508	992 bp upstream
Tssr29509	transcription start site region 29509	1173 bp upstream
Tssr29510	transcription start site region 29510	1211 bp upstream
Tssr29511	transcription start site region 29511	1314 bp upstream
Tssr29512	transcription start site region 29512	1607 bp upstream
Tssr29513	transcription start site region 29513	1801 bp upstream
Tssr29514	transcription start site region 29514	1906 bp upstream
Tssr33516	transcription start site region 33516	239 bp downstream
Tssr33517	transcription start site region 33517	326 bp downstream
Tssr33518	transcription start site region 33518	349 bp downstream
Tssr33519	transcription start site region 33519	377 bp downstream
Tssr33520	transcription start site region 33520	427 bp downstream
Tssr33521	transcription start site region 33521	439 bp downstream