rs213236903 SNP Detail

Summary

• ID
  rs213236903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33037117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCCACG GCACTCACCC
  GGATGCCCTT CACCACGGTG ATGTTCTCGT TCTCGTCCGC CTCGAAGGTG ACCCGGCGGG
  TGCTAGCGGT CCCGCCCATG GCTCCTGCTT CTGTCCCCGC AGAGTCTGGA GCGTGGACCT
  ACGAGCACGT CAGGACCCAC GCGCACACTT GCGCGTGAAA GCCCTGGACG CTTCTCTTGC
  R
  GGGCAGGAGC AAGGCCACGA CCCCAAAAAA GAAGCAAGGA GAAGGCGCCG GTCCCAAAAG
  CCCGCCTCCT CCGGTCACGT GCCAGAAGTA GGCCGCTTCG GGTTAGCCCG AGAAGCAAAC
  TGCCCGCCTC TTATCAGAAG GTGCACTAGG ATTGGCTGGA TTGGACCCGG ATGCTATGGC
  AACAGGTGGT GCTTAATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321780406	CHEV_6_33010182	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213236903					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33037117 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	within coordinates
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	52 bp upstream
Tssr60218	transcription start site region 60218	within coordinates
Tssr60219	transcription start site region 60219	74 bp downstream