rs213240862 SNP Detail

Summary

• ID
  rs213240862
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128615756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGTGA AACTGAAGGA
  AGGCCACGCC TCCCCTGACT CAGTTTGAAG CCTTTGTGGT TGCAGACAGA CTCAGTCAGG
  TGCTTGGTAA ATGTTAGCTT GCCCCCATAG TCTGTCTGTC CTTATGTGGC TGTACAGATC
  TGGTGTGAGT GTGCCACTGT GGCCCTCTAT GTCTGGCTGG CGTACCTATT CACTCAGCTC
  K
  GTAGCTGTGA GAGTCACTGT GGAAGGGATC ATCTCTCACA GGAGGACATA CTCAGCTGAC
  CTGCTGGCAG TCTGAGCTGG CCTGACCTGG ATGCTCTCCA GGTACAGCAT CTGCACTCAG
  AACTGGATTT CCTAGCTCAT TATTACGTAT CAGGCAAAAG CTAAAAACAT ACCAGGGACT
  ACTAAAAGCT GTAAGAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321306928	CHEV_4_128399207	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213240862					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128615756 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	1369 bp distal
Rr600013	regulatory region 600013	516 bp distal
Tssr39071	transcription start site region 39071	218 bp upstream