rs213246655 SNP Detail

Summary

• ID
  rs213246655
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36072876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGAGCTA GCGAAGGCCA
  GGAGGGGGCG CACGAACAGT CGCCCGGAGG TCACAGAGCA GGGTGCGGCC AGAGTGGAAG
  GCCAAGGGGT GAAGTGCCGT TGTACCGACG CTGAATCCAC GCCTAAGGGT GGGGCTGCAT
  CCTAGGGGTA TTCTTTCCGA AGTTGCTGCA CCTTCTACGC CGCCTCCTTT GCGGGGCCCA
  S
  AAACACCGTC GTGGTTTGAG CTCTGAGAGG GAACGCGCGC CCTCTGGTGG CCGCGACGCA
  GAACGGCTCC CAGGTTGCTG GAGAAGGGGC ACTGTTGAGA GTACCTACCT CTTCACCTGT
  TTGAGATTGT TTTCCAACCC CTAGCAGTCT TTGAAGGGTC AAATGCATCC ACCCTTCCTC
  TCACAAAATG AGATTTCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584110	CHEV_18_36099477	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213246655					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36072876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9857	CpG island 9857	988 bp distal
Cpgi9858	CpG island 9858	within coordinates
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	458 bp distal
Rr536028	regulatory region 536028	166 bp distal
Rr536029	regulatory region 536029	34 bp proximal
Rr536030	regulatory region 536030	573 bp proximal
Tssr152921	transcription start site region 152921	1614 bp upstream