rs213248167 SNP Detail

Summary

• ID
  rs213248167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126922657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTGTT GACATCTAAA
  GCCAGCGTGA AAACTGTATC CATAGAGAGT TCGCGCCCCA AGATCCCGAA CCTCTCTCTC
  TCTTCACGGA CACTGACTGA AGAGGCCAAG ATGAGTACTG AGGTGAGCTG CCCTCAGGGG
  CTGTAAGGGA CACCTTTGCT GCAGTTTCCA AACCTGTCCC CTAAGCTACC CACTTGCTCA
  Y
  GGCTGTGGGT GATAGAGGGA AAATTATCTC CCTTGAGTTT TATCTGTTCC TGCTATGGGT
  CACTATGCTG CCTCCCCCGC CCCTTTCAGT TCCTAGCCAT GAAGTGAGGA ATCTCCCTGT
  GCTGTGTGCT CCTGGCATAG TGGGCTTTGC CTTCCAAGCC CACACAACGA GGCCTACTAA
  TCCGTGATTT CACCCACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355586477	MGP_WTSI_2_126906473	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213248167					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355586477	MGP_WTSI_2_126906473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126922657 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38146	regulatory region 38146	1344 bp proximal
Rr55562	regulatory region 55562	56 bp distal
Tssr19977	transcription start site region 19977	1812 bp downstream
Tssr19978	transcription start site region 19978	526 bp downstream
Tssr19979	transcription start site region 19979	489 bp downstream
Tssr19980	transcription start site region 19980	475 bp downstream
Tssr19981	transcription start site region 19981	240 bp downstream
Tssr19982	transcription start site region 19982	207 bp downstream
Tssr19983	transcription start site region 19983	157 bp downstream
Tssr19984	transcription start site region 19984	819 bp upstream