rs213250129 SNP Detail

Summary

• ID
  rs213250129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCAAGCGT CCACGCGGCG TGTCCCCCTG
  GTGGTAAAAT CCCGCTACTG TATAGCATGC AGTGTCAAGG CAAAGGCTCT GACCAAGAAG
  CCTTTCTGGA TTGTAAGCTG CACCACAACC TAACTGGATT TGAGGGTTGA ATAGGATCAC
  Y
  TGGAGGCCAT ATTACATGCT GGCCAAAAGA TGGTTTCTTC GTTCTAGTAC CTCCCGCGAA
  AAGCGGGGAA GGTTGGACCG AAGTCAGAAT TTCTCTAAAC TCTCCATTAC ACTCATACTG
  AGCCACCTTC CCCTGCCGTC ATCTAAAATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548172	CHEV_2_147004161	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213250129					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	within coordinates
Cpgi12377	CpG island 12377	217 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1865 bp proximal
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	530 bp distal
Rr566761	regulatory region 566761	136 bp distal
Rr566762	regulatory region 566762	531 bp proximal