rs213252405 SNP Detail

Summary

• ID
  rs213252405
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTATCAA TAAAACATTG ACGTCCAATA
  GAAAGAGCAG tgtttgtctg tctgtctgtc tgtctgtttg tttgtttgtt tgtttTTAAA
  GAAAGAAAAG AAAaggggag gggaggggaa gggaggggag AAAAAATTCT GGGGGAGTTG
  W
  AATTTCGTTA TCAAGATTCA CTTTGCTGAT CAGCCTAAAT CCTCTGCGAA GCATGGTGAT
  GCGATAGTAT TCCCATTTCA CATACCCTCC AGTACAACTA TGTGTCACGT CTCAGGCAAA
  GATCCACTGA AATGTTGTTC CTCTCAATGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052982	CHEV_1_152841361	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213252405					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	438 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	796 bp upstream
Rr420192	regulatory region 420192	1592 bp distal
Rr420193	regulatory region 420193	690 bp distal
Rr420194	regulatory region 420194	351 bp distal
Rr420195	regulatory region 420195	237 bp distal
Rr420196	regulatory region 420196	272 bp proximal
Tssr14167	transcription start site region 14167	1076 bp upstream
Tssr14168	transcription start site region 14168	782 bp upstream