rs213254846 SNP Detail

Summary

• ID
  rs213254846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65020429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCCCG CGGCTACCCA
  CCCACCCTCC TGCTGCAGCT GACACCCCCG GGTCTCCGCA GACACGCTCC CGGGACCTGA
  GAATCCTCAC CCGGGGCGAC TTTCCAGGCG CGGGACCTGT TGCACGTCGC CTCCCAGCGC
  GAGCCGGAGC CAGGCACCGG CAGCCGTGCA CCTGCCCGGG CGGCAGGCGC ACCCCCAGCC
  Y
  GCCCTCCCGC CTTCCCTCAC CGCCCCGCCG CGGTCGCCCC CGGCTGCCGC CGCGGGGAGG
  GCGGGGCGAG GCTCCCCCGC CGCCCCCCGC CGCCCAGCCC GCCGCCCGGC TGGCCGAGAG
  GTTCTCACCT TAGCGGCCGC GGCCCTGGCG GACATCTTGT CTCTCTCCGC GCCGCGCGAA
  GCTCCTCGGA CCCGAAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371680323	MGP_WTSI_7_72515567	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213254846					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371680323	MGP_WTSI_7_72515567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65020429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	within coordinates
Gm57226	predicted gene, 57226	622 bp upstream
Rr647944	regulatory region 647944	1207 bp distal
Rr647945	regulatory region 647945	within coordinates
Rr647946	regulatory region 647946	324 bp proximal
Rr647947	regulatory region 647947	633 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	741 bp upstream
Tssr72804	transcription start site region 72804	193 bp downstream
Tssr72805	transcription start site region 72805	208 bp downstream
Tssr72806	transcription start site region 72806	227 bp downstream
Tssr72807	transcription start site region 72807	529 bp downstream