rs213256698 SNP Detail

Summary

• ID
  rs213256698
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166230834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAATTAC ACGCAACAGA
  TAGATAAGAC AACAAAGTTT TCCTTTCCAA GATTCAACAG AAGACAGGCT TAGATCCATG
  GTGATATTCT GAAGACTTAT TCCCTCCCTC CCTCCCTCCC TCCCTCCCTC CCTCCCTCCC
  TCCCTCCCTC CCTCCCTCCC TCCCTAGGAA TGGGAATATT TGGGCCAAAT GAGAACTGTT
  C
  TGAGAGGTAA CATGAGTTTT CAAACAGAAG TACATCATCT GTATTTCATA TTCAAATCAA
  AACCAGGAAA TTAGGTTGAC ATAGGCTTGG GCGGGGGGGG GGGGCACGGG GGGTGGGGAC
  GGACACACAC GACCCACTCA GAGGAGGAGA TTGGATATAG CAGAGAAGAC AGACACTGAT
  GAATGTCTCT GGGTTTGGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss352263313	MGP_WTSI_1_168333396	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs213256698					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352263313	MGP_WTSI_1_168333396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166230834 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	1561 bp distal
Rr422580	regulatory region 422580	893 bp distal