rs213259989 SNP Detail

Summary

• ID
  rs213259989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7506924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagagagag gggagagaga gagagagaga
  gagagagaga gagagagagg agagaggaga gagagagaga gaggagagag gagagagaga
  gagagagaga gagagagaga ggagagagga gagagagaga gagaggagag agagagaggg
  R
  ggggagagag gagagagaTT AATGGGGAAA GTGTGTATGA GAGAGGTGGA GAGCATGCAT
  AAAAACACAC AGATACTGAG AGACAGAGAT ATAGTGATCA TGAGAGAAag gggaggggag
  aggagagaaa acgaatagag gaaagaggag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888091	CHEV_X_7217811	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213259989					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7506924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	1735 bp distal
Rr689618	regulatory region 689618	151 bp distal
Syp	synaptophysin	within coordinates
Tssr160397	transcription start site region 160397	1988 bp downstream
Tssr160398	transcription start site region 160398	408 bp upstream