rs213260552 SNP Detail

Summary

• ID
  rs213260552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91443985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCAGCTC CGGCTCGCAC
  CCGCCACTCG CACCCGCCGG AAGTTGGCCC GGGGAATCCA GCGCGCCCCG GCCTCTGCCC
  CGCCTCCGAT GGACTCGGCT GCTCATTGGC CGCAGCCCGC CTAGGTCCCC GCCCGCGAGG
  CGACCCGTGG GGGTTCCTCC CGCCTTAGGG TGCGGTCGGA GCCCGCTGCC TAGCCGGGCT
  Y
  AGAATCCCTG GCACCACGAT TAGAGCTGAT GATGCTCGTC AGGGGCTGTC ACTTAAGGTC
  CCTGCGTTTA CCCCAGAGCC TCCTACACTG GGGGCAGAGC CGAGGCTGCC TGACTGTGGC
  TGCTCACCAA GCGCCAGGGC GGAGCGGCCA GGGCTGGACT CCGGAGCAGC TCAAGCGCAC
  TGCGTTTAGA ACGCAGGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397326533	MGP_WTSI_16_91647342	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213260552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397326533	MGP_WTSI_16_91647342	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91443985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	within coordinates
Gart	phosphoribosylglycinamide formyltransferase	145 bp upstream
Rr319637	regulatory region 319637	1385 bp distal
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	461 bp upstream
Rr404967	regulatory region 404967	1751 bp upstream
Son	Son DNA binding protein	727 bp upstream
Tssr139422	transcription start site region 139422	within coordinates
Tssr139423	transcription start site region 139423	745 bp upstream
Tssr139424	transcription start site region 139424	762 bp upstream
Tssr142101	transcription start site region 142101	137 bp upstream
Tssr142102	transcription start site region 142102	532 bp downstream
Tssr142103	transcription start site region 142103	594 bp downstream