rs213266131 SNP Detail

Summary

• ID
  rs213266131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:62311230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAACAA AAACAAAACA
  ACTGATGTTG TCCCTCAAAT CCCTGCCTGC AACACTCCAT TTGAGTAAAT AAGTGGAGTG
  AGAGAGAAAG GGCCCATTGT CACAGCAGAA AGGTCCAAGA CACAGGATAT TTCAAGTCCA
  AGGGTACAGG AAGAAAACTC TCTCCTTTAG ATATGGATTT CCAGCAGCAA TATATATCAT
  Y
  CTTAATACTT GACCAGTGAG GTAGATACAT GAAAACATCA TCCAGACAGA CAGACAGACA
  GACTCAGTCC TCCAGAACCA ACACTCTTCA GACAGAAACC TTTAAGTTCC ATACAAAGAG
  GAACTGAACT ATACAAGAAA ACAATAAGCA CTCAAATACA GTTTCTCTCT CTTGTTTGCA
  GCTTAAAAAA TAAAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400901003	MGP_WTSI_18_62337813	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213266131					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400901003	MGP_WTSI_18_62337813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62311230 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	mRNA-UTR
Cpgi10125	CpG island 10125	807 bp proximal
Gm9949	predicted gene 9949	1876 bp upstream
Rr393783	regulatory region 393783	1440 bp upstream
Rr539062	regulatory region 539062	302 bp distal
Rr539063	regulatory region 539063	1671 bp distal
Rr539064	regulatory region 539064	732 bp proximal
Rr539065	regulatory region 539065	843 bp proximal
Rr539066	regulatory region 539066	1790 bp proximal
Tssr151487	transcription start site region 151487	1960 bp upstream
Tssr153622	transcription start site region 153622	297 bp upstream
Tssr153623	transcription start site region 153623	1789 bp downstream