rs213266271 SNP Detail

Summary

• ID
  rs213266271
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGTCTTT GACCATAGTA
  AACCCAAAGG GGCAGATGCT GCTTTCTGAC ACCTCGGGAC TCGTTCTTGG TTCTAGGCGC
  AAAGCTTTTA AGAGTCAAGA TTCAGGCTGT ATTGCTTTTA TTTACGAAAT TATAACAAAA
  ATTAAAGTTC TTGACTAGTT ATAGTTCCCC TTCCTGAAAC GCAAATTTTT GGGGGTGTTT
  W
  GAAGGGAAAA AAAGAAAGAC AGTGAGATAC TAGCTGGTTT ATTTGTCGTG AAAGAAACAG
  GACTTGGTTA CTTCCCCATG TGGAGAGGTA AATGGAAAAT ATGAGAAGAA TTAGAATAAA
  TTATAGCTAC ATGTAATTGG AAGAAATGGC TGACTATTTT TGGTGTTTAG TTCACTGAAG
  AAAATTTTGT TCAGAAAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325827258	CHEV_19_47806864	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213266271					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	253 bp distal
Gm58934	predicted gene, 58934	815 bp upstream
Rr370527	regulatory region 370527	1100 bp downstream
Rr406020	regulatory region 406020	135 bp downstream
Rr549123	regulatory region 549123	826 bp distal
Rr549124	regulatory region 549124	1156 bp distal
Rr549125	regulatory region 549125	1015 bp distal
Rr549126	regulatory region 549126	887 bp distal
Rr549127	regulatory region 549127	682 bp distal
Rr549128	regulatory region 549128	within coordinates
Sfr1	SWI5 dependent recombination repair 1	within coordinates
Tssr156884	transcription start site region 156884	606 bp downstream
Tssr156885	transcription start site region 156885	577 bp downstream
Tssr156886	transcription start site region 156886	571 bp upstream
Tssr156887	transcription start site region 156887	1278 bp upstream