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rs213278284 SNP Detail
Summary
  • ID
    rs213278284
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:52177777 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTACAGGAA GCTAGAACCT
    TTAAAGGGCC AGTGCCTCCA GGCTGGGAGG CCACACTTTT TGCACTCAGA GAAAGGCTTC
    CACAGTTGGG CTGGCTTGGG GAGGTATGCA TTTAATTGAA AGCCGAGAGG CTGCTGTGTG
    TGACCAGATT ATGCGTGAGT GTTGGGGAGT GATTTACCGT AAAGCATGCA GCTACCCACG
    R
    CCGGGCAAGT CTGGGAGCCC TGAAGTGAGT ATTTGGTGGA AGTCTTAAGT GCTCACTTGG
    GGAATTACGG AAGACCTTTT TGCCTCGAAG GAGGATTGGA GACTTATAAA TTAGGTGTTT
    AAGGCCTTTG TTTACCTTTC CGGTGGGAGG GAGAGGACAG GTGACTCAGT GTGGACTGTG
    GCATCCCTAC CAGTGGAGGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357951521 MGP_WTSI_3_52074278 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A G A G A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213278284 SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A G A G A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357951521 MGP_WTSI_3_52074278 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:52177777 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13156 CpG island 13156 207 bp distal
Foxo1 forkhead box O1 Intron
Gm20402 predicted gene 20402 921 bp upstream
Rr397666 regulatory region 397666 1968 bp downstream
Rr576491 regulatory region 576491 1410 bp distal
Rr576492 regulatory region 576492 431 bp distal
Rr576493 regulatory region 576493 993 bp proximal
Tssr29089 transcription start site region 29089 1968 bp downstream
Tssr29090 transcription start site region 29090 1951 bp downstream
Tssr29091 transcription start site region 29091 1932 bp downstream
Tssr29092 transcription start site region 29092 148 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory