rs213279858 SNP Detail

Summary

• ID
  rs213279858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106555688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTACTT TAATGGGTTG
  TCTGTGAAGG TCATTCAATA CTAGGAAATT CTCCTGAGCA CACATTGCCT GCAGCCATTT
  ATAACACCGA GTTTTCACCA CCATTGAGAT ATAAATGTAA ATATTTTGCA TTCCTCCTTG
  AGGTTTGGTG TTAAATCACT TTTTAAAAAA TAGGAGTCTA GGTTGTGTGG TGATGGCGCA
  Y
  GCCTTTGAAC CCAGCACTTG GGAGGCAGAG GCAGGCAGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAG AGTTACAGAG TGAGTTCCAA GACAGCCAGG ACTATACAGA GAAACCCTCT
  CTTGAAAAAC CAAAAAAAAA AAAAAAAAAA AAAAAGGAGT CAAGGGGGCT GGAGAGATGG
  CTCAGTGGTT AAGAGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375919924	MGP_WTSI_8_108352956	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213279858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375919924	MGP_WTSI_8_108352956	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106555688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20953	CpG island 20953			1152 bp distal
Gm64218	predicted gene, 64218			1493 bp downstream
Ranbp10	RAN binding protein 10			Intron
Rr401097	regulatory region 401097			1676 bp downstream
Rr669016	regulatory region 669016			1302 bp distal
Rr669017	regulatory region 669017			739 bp distal
Rr669018	regulatory region 669018			1333 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1			Intron
				Noncoding-Transcript-Variant
Tssr79188	transcription start site region 79188			1305 bp downstream
Tssr79189	transcription start site region 79189			1287 bp downstream
Tssr79190	transcription start site region 79190			1283 bp downstream
Tssr82695	transcription start site region 82695			1842 bp upstream
Tssr82696	transcription start site region 82696			1452 bp upstream
Tssr82697	transcription start site region 82697			1419 bp upstream
Tssr82698	transcription start site region 82698			1390 bp upstream
Tssr82699	transcription start site region 82699			1365 bp upstream