rs213282981 SNP Detail

Summary

• ID
  rs213282981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23923871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAGTTTGAGC TTCCTGCCTG GAGAAACGCA TCCGGGGCTT GTAGGTGGCT
  Y
  CTATGCTCAG CCTCTTGTGG GGGTTAGCCT GGAAGTTTGG GAGAAGGTGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291272	CHEV_13_23831757	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213282981					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23923871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	within coordinates
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1768 bp upstream
Rr475930	regulatory region 475930	1070 bp distal
Rr475931	regulatory region 475931	702 bp distal
Rr475932	regulatory region 475932	1923 bp proximal
Tssr118854	transcription start site region 118854	1079 bp downstream
Tssr118855	transcription start site region 118855	690 bp downstream
Tssr118856	transcription start site region 118856	within coordinates
Tssr118857	transcription start site region 118857	238 bp upstream