rs213284609 SNP Detail

Summary

• ID
  rs213284609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGAATA TTCTGTGTCC
  TGGGATATCA CTTCCCGCCG GAACAGCTTG TGATTGGACA ACCACAGAAC CAGCACTGTG
  GAGGGGAAGT GTCGCCCCGC AGCTACACAG GCTTGTGCCT AACTCCTGTC TTTTCTTTTT
  CCCAGGGAGG AAGAGACAGC CGCTCTGGAT CTCCCATGGC GAGACGCTGA GAGCCCTCCC
  Y
  GCTCAGCCTT CCCGAATCCT GCCCTCGGCT TCTTAATATA ACTGCCTTAA ACTTTTAATT
  CTACTTGCAC CGATTAGCTA GTTAGAGCAG ACCCTCTCTT AATCCCGTGG AGCCGTGATC
  GCGGTGGGGC CAGGCCCACG GCACCCCGAC TGGTTAAAAC TATTCGTCCC TTTTCGTTTG
  AAGATTGAGT TTTCTCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436734	MGP_WTSI_18_82753559	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213284609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436734	MGP_WTSI_18_82753559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602292 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	455 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	32 bp distal
Tssr152152	transcription start site region 152152	42 bp downstream
Tssr152153	transcription start site region 152153	within coordinates
Tssr152154	transcription start site region 152154	83 bp upstream
Tssr152155	transcription start site region 152155	121 bp upstream
Tssr152156	transcription start site region 152156	194 bp upstream
Tssr152157	transcription start site region 152157	245 bp upstream
Tssr152158	transcription start site region 152158	302 bp upstream
Tssr152159	transcription start site region 152159	332 bp upstream
Tssr152160	transcription start site region 152160	382 bp upstream
Tssr152161	transcription start site region 152161	399 bp upstream
Tssr152162	transcription start site region 152162	415 bp upstream
Tssr152163	transcription start site region 152163	440 bp upstream
Tssr152164	transcription start site region 152164	480 bp upstream
Tssr152165	transcription start site region 152165	533 bp upstream
Tssr152166	transcription start site region 152166	599 bp upstream
Tssr152167	transcription start site region 152167	614 bp upstream
Tssr152168	transcription start site region 152168	649 bp upstream
Tssr152169	transcription start site region 152169	710 bp upstream
Tssr152170	transcription start site region 152170	791 bp upstream
Tssr152171	transcription start site region 152171	851 bp upstream
Tssr152172	transcription start site region 152172	958 bp upstream
Tssr152173	transcription start site region 152173	981 bp upstream
Tssr152174	transcription start site region 152174	999 bp upstream
Tssr152175	transcription start site region 152175	1022 bp upstream
Tssr152176	transcription start site region 152176	1231 bp upstream
Tssr152177	transcription start site region 152177	1399 bp upstream
Tssr154083	transcription start site region 154083	50 bp downstream
Tssr154084	transcription start site region 154084	74 bp downstream
Tssr154085	transcription start site region 154085	346 bp downstream
Tssr154086	transcription start site region 154086	901 bp downstream
Tssr154087	transcription start site region 154087	1116 bp downstream
Tssr154088	transcription start site region 154088	1156 bp downstream
Tssr154089	transcription start site region 154089	1267 bp downstream
Tssr154090	transcription start site region 154090	1339 bp downstream