rs213288261 SNP Detail

Summary

• ID
  rs213288261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142605415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAAATT AACTCTCAAG
  AAGCCTACTA GCCTAGCCGA GTAGAGATAG CTCCACCCAG GCAGCTACTG GCCAATCATC
  AGGTTTACAT GTAAATTATA CATAGTTCAA ATTTTCGCCC TTTAGACAAC TGGGCATGGT
  GTCCTAAACC TACAGTCTCA GCACTTAGGA AGCAAAAGTA GACAGAGCTC TGTTCCAGGA
  R
  CCAGGGCTAC ATTGTGAGAT TCTCATTCTC TGTCTGTCTG TCTGTCTCTG TCTGTCTGTC
  TCTCTCTCCA CATATATATT ATAGATATTC CTTTCCTTTG TTTAAATATA TATGTATATC
  TATTCCTTTT TAAACATATT TCCAGTGTCC TGTAGCCAGA GGGGTGCCAG GTGTGATCTC
  CATAGGGAAC AATGTCCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373462420	MGP_WTSI_7_150237583	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213288261					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373462420	MGP_WTSI_7_150237583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142605415 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	1072 bp upstream
Cpgi19971	CpG island 19971	750 bp proximal
R74862	expressed sequence R74862	within coordinates
Rr167007	regulatory region 167007	385 bp proximal
Rr381609	regulatory region 381609	808 bp downstream
Rr381610	regulatory region 381610	1806 bp upstream
Rr400727	regulatory region 400727	879 bp upstream
Tssr70268	transcription start site region 70268	1074 bp upstream
Tssr70269	transcription start site region 70269	1098 bp upstream
Tssr70270	transcription start site region 70270	1796 bp upstream
Tssr70271	transcription start site region 70271	1839 bp upstream
Tssr70272	transcription start site region 70272	1876 bp upstream
Tssr75917	transcription start site region 75917	1701 bp downstream