rs213289795 SNP Detail

Summary

• ID
  rs213289795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8059080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA GAGACCGAAT TTATCAAATG
  R
  ACATTCAGAG GGAACTGGAG CACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064692	MGP_WTSI_12_8015886	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213289795					SNP	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064692	MGP_WTSI_12_8015886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8059080 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	368 bp downstream
Tssr112636	transcription start site region 112636	1648 bp downstream
Tssr112637	transcription start site region 112637	1568 bp downstream
Tssr112638	transcription start site region 112638	1503 bp downstream
Tssr112639	transcription start site region 112639	1261 bp downstream
Tssr112640	transcription start site region 112640	1219 bp downstream
Tssr112641	transcription start site region 112641	1167 bp downstream
Tssr112642	transcription start site region 112642	1093 bp downstream
Tssr112643	transcription start site region 112643	1004 bp downstream
Tssr112644	transcription start site region 112644	790 bp downstream
Tssr112645	transcription start site region 112645	688 bp downstream
Tssr112646	transcription start site region 112646	659 bp downstream
Tssr112647	transcription start site region 112647	487 bp downstream
Tssr112648	transcription start site region 112648	465 bp downstream
Tssr112649	transcription start site region 112649	6 bp upstream
Tssr112650	transcription start site region 112650	65 bp upstream
Tssr112651	transcription start site region 112651	136 bp upstream
Tssr112652	transcription start site region 112652	160 bp upstream
Tssr112653	transcription start site region 112653	187 bp upstream
Tssr112654	transcription start site region 112654	203 bp upstream
Tssr112655	transcription start site region 112655	221 bp upstream
Tssr112656	transcription start site region 112656	243 bp upstream
Tssr112657	transcription start site region 112657	258 bp upstream
Tssr112658	transcription start site region 112658	291 bp upstream
Tssr112659	transcription start site region 112659	344 bp upstream
Tssr112660	transcription start site region 112660	496 bp upstream
Tssr112661	transcription start site region 112661	727 bp upstream
Tssr112662	transcription start site region 112662	971 bp upstream
Tssr112663	transcription start site region 112663	1206 bp upstream
Tssr112664	transcription start site region 112664	1231 bp upstream
Tssr112665	transcription start site region 112665	1396 bp upstream
Tssr112666	transcription start site region 112666	1405 bp upstream
Tssr112667	transcription start site region 112667	1452 bp upstream
Tssr112668	transcription start site region 112668	1590 bp upstream
Tssr112669	transcription start site region 112669	1675 bp upstream
Tssr112670	transcription start site region 112670	1728 bp upstream
Tssr112671	transcription start site region 112671	1843 bp upstream