rs213290625 SNP Detail

Summary

• ID
  rs213290625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12569662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTCTT TTCAACTTTT
  GAGTCGGCTC AGGGGTCGGC TAGTGGTGAG ACGTTTGTTC TCAAATATCA TTGAGTTTCG
  GGAGGAGTTG GAGGACTGCC CAAGAGGGTG GTTACAATAG AAGAAACAAA CAAACCGATT
  TCTGAACCAG GAACTGGCAA GCCAGATTGA GGCTTTTTAA TTAAAAAACA ATACTATTAC
  W
  TTTGGGGGGG GGGGGGCATG CACGTGTGTG CCACTGCCTG CTTGTAGAGG ACAGAGAGTA
  CCTTTCCGGA TCGCTACCCT TCTTCCAACA TATGAATCCT GAAGATCAAT CAAACTCAGG
  CTTGGTAGCA GGCACCTTTA CCCACTGAGC CATCTCACCA ATCCTTTTCA ACCTTTATTT
  TTTCTTTTTT TTTTTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370650278	MGP_WTSI_7_13421084	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213290625					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370650278	MGP_WTSI_7_13421084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12569662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	316 bp distal
Rr642383	regulatory region 642383	964 bp distal
Rr642384	regulatory region 642384	789 bp distal
Rr642385	regulatory region 642385	242 bp distal
Rr642386	regulatory region 642386	within coordinates
Tssr64479	transcription start site region 64479	924 bp downstream
Tssr64480	transcription start site region 64480	683 bp downstream
Tssr64481	transcription start site region 64481	474 bp downstream
Tssr64482	transcription start site region 64482	215 bp upstream
Zfp110	zinc finger protein 110	within coordinates