rs213293786 SNP Detail

Summary

• ID
  rs213293786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150871355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAACATTCA TTTTCAAAAA CGTTACGTGT
  GCAGGAGACa cttgaagctg tttcattgct cactaacatt gtgttcattt tccttaattg
  ttccctttct tccctagttt cattttaata gtttctatac tatgtcttta tgttctctta
  S
  tctattcctt actgtgtaat acaccagtgg ttcctctcat gtaatttcat catgaatgtt
  acagtttcca tttgtctcca ggagtgcaat ttgaatcatt ttaaaaactt tgttgtctca
  ctttgaatct ataaccacac taattcaggt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052999	CHEV_1_152842734	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213293786					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150871355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	1811 bp distal
Gm29188	predicted gene 29188	within coordinates
Rr420194	regulatory region 420194	1724 bp distal
Rr420195	regulatory region 420195	1610 bp distal
Rr420196	regulatory region 420196	568 bp distal