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rs213294293 SNP Detail
Summary
  • ID
    rs213294293
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr9:15539090 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGGAAGAAC CTCCTTTCAG
    ACCATTTGCC ACCACAGGAA TTGCAGCAGT GAGACAGACA CTGGAGGCGA CAGGAGACAA
    AGCTAAGTCA AAAGGTTCAG ACAAATTAAG GAGAGAAACT GAGGCACAGT TCCCTGGGTC
    GCTGGAAGCA GCAGTCCGGC CGGCCATCTC CTTGCTAGCT GCAGCCTAGG GGAGGGACAG
    K
    GCCTGGGTAC AGGGAGTCCA CCTGTTACCT GTACTGCTGT CTGGAGAGGT CTGCCCTGGC
    CTGGGCTGCG GGTCCCGCCC GCAGTGCCCG CCCGCCCAGC GCAGTTGGCG GCTGGTTCCC
    AGTGGGTTGC CATGGAGACG CGGCCTCCGC ACCAGTCCGC TTCCTTCTAG CGGGAACTCC
    CCAGCACTGG CGCGGCCAGG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss376737715 MGP_WTSI_9_15432238 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G T G T G G G G G G G T G G T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213294293 SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G T G T G G G G G G G T G G T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss376737715 MGP_WTSI_9_15432238 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:15539090 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930540M03Rik RIKEN cDNA 4930540M03 gene within coordinates
Cpgi21372 CpG island 21372 within coordinates
Deup1 deuterosome assembly protein 1 within coordinates
Rr674358 regulatory region 674358 within coordinates
Rr674359 regulatory region 674359 99 bp proximal
Rr674360 regulatory region 674360 152 bp proximal
Tssr83870 transcription start site region 83870 131 bp upstream
Tssr88249 transcription start site region 88249 26 bp downstream
Tssr88250 transcription start site region 88250 46 bp downstream
Tssr88251 transcription start site region 88251 76 bp downstream
Tssr88252 transcription start site region 88252 103 bp downstream
Tssr88253 transcription start site region 88253 116 bp downstream
Tssr88254 transcription start site region 88254 489 bp downstream
Tssr88255 transcription start site region 88255 532 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory