rs213294547 SNP Detail

Summary

• ID
  rs213294547
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84129463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aagataagt gattgtctta gtaagggttt
  ccattgccag aaagagacat catgaccaag gcaactctta taaagaaaaa catttcattg
  gtgctggctt acagtttcag aagctcagtc cattatcatc atgatgatag catagcagta
  W
  acaggctagc atggtgctgg agatagagct gagagttcta catcttgacc catagtcagt
  agaagactga gtcccacagt aggtggagct tgagtgtaag aaacctcaaa gccagccccc
  acagtgacat acttcctcca acaagaccac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319823983	CHEV_1_84148317	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213294547					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84129463 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12590	transcription start site region 12590	1537 bp upstream
Tssr12591	transcription start site region 12591	1254 bp upstream
Tssr12592	transcription start site region 12592	897 bp upstream
Tssr12593	transcription start site region 12593	861 bp upstream
Tssr12594	transcription start site region 12594	806 bp upstream
Tssr12595	transcription start site region 12595	410 bp upstream
Tssr12596	transcription start site region 12596	1220 bp downstream