rs213300698 SNP Detail

Summary

• ID
  rs213300698
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:119996332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCATTGTG TGAAAGCAGA
  AGAGGTCAAT CCTCCCCATG TTGGCTGAGA AGCAAAGACC AGTAGCAAGG TCCAGGGTCC
  TAATATCCCT TCAAGGAGAT GCTCCTAATG ACCTGAGTTC CCATACCAGA GTCCACTTCC
  TAAATGTCCC AACGCCACTA ATACGACCAC TGTAGAGACC GTCAAATCTT CAATGTAGGA
  K
  CCTTTGAGAG ATATTTCCTT GGGGGAGTGG AAGATCTCAT CGTACATCTC ATACCTGTTG
  GGATAAACTT CTTGTCTGCT GTGTACAGGT TTTCTTTGTA TTATTTAAAT GTCGATTCCT
  GTACCAGCAG AGAGTGGAGA ACAGGCTATC ATTTTTAGGA AGCATCACCT GTCCCAGTGT
  TTCGTGAACA CTCTTCTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381988254	MGP_WTSI_10_119597483	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213300698					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381988254	MGP_WTSI_10_119597483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:119996332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D10Mit236	DNA segment, Chr 10, Massachusetts Institute of Technology 236			1607 bp distal
Gm67388	predicted gene, 67388			303 bp upstream
Irak3	interleukin-1 receptor-associated kinase 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr385391	regulatory region 385391			1888 bp upstream
Tssr3374	transcription start site region 3374			48 bp downstream
Tssr95979	transcription start site region 95979			282 bp upstream
Tssr95980	transcription start site region 95980			1783 bp upstream
Tssr99537	transcription start site region 99537			1591 bp upstream
Tssr99538	transcription start site region 99538			881 bp upstream
Tssr99539	transcription start site region 99539			843 bp upstream
Tssr99540	transcription start site region 99540			808 bp upstream
Tssr99541	transcription start site region 99541			321 bp upstream
Tssr99542	transcription start site region 99542			1014 bp downstream