rs213316403 SNP Detail

Summary

• ID
  rs213316403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGAAGA TGGCTGAGAC
  CAAGAGCACA GGGCTGAGGG GCAGACAGGC ACTGACACTG CTACCCTTTA ATACAGTTCC
  TCCTGTTGTG ATCCCCAACC ATAATTACTT CGTTGCTACT TCATAACTGT AATTTTGCTA
  GTTATGAATT GTAAGTAAAC GTCTGATATG CAGGATATCT CATTTGTGAC CCCTGTGTAA
  Y
  GGTTTGATTC CCAAAGGGCT TACGACTCAC AGGTTGAGAG CCAGCCACTG CCTTAAAGTC
  GTCTAGAATC AGTTTTCTTT CTTTTTTGAC AGACAAGATG TTTAATTCCG TTGTACTGAA
  GGAAAGCCAT TTTATGTATT TTTCTTAAGT GCTCTATCAG TAATGACAAT TCTGAAAGCC
  CCTGTGTTAT ATTTTAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668080	MGP_WTSI_19_6045712	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213316403					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668080	MGP_WTSI_19_6045712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	502 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	890 bp upstream
Gm59262	predicted gene, 59262	390 bp upstream
Rr370438	regulatory region 370438	596 bp upstream
Rr405816	regulatory region 405816	1231 bp downstream
Rr405817	regulatory region 405817	11 bp upstream
Rr543275	regulatory region 543275	1272 bp distal
Rr543276	regulatory region 543276	1408 bp distal
Rr543277	regulatory region 543277	73 bp proximal
Rr543278	regulatory region 543278	347 bp proximal
Rr543279	regulatory region 543279	961 bp proximal
Rr543280	regulatory region 543280	1300 bp proximal
Rr543281	regulatory region 543281	1403 bp proximal
Rr543282	regulatory region 543282	1596 bp proximal
Rr543283	regulatory region 543283	1659 bp proximal
Rr543284	regulatory region 543284	1707 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	864 bp upstream
Tssr154538	transcription start site region 154538	392 bp upstream
Tssr154539	transcription start site region 154539	917 bp upstream
Tssr154540	transcription start site region 154540	1309 bp upstream
Tssr154541	transcription start site region 154541	1343 bp upstream
Tssr154542	transcription start site region 154542	1369 bp upstream
Tssr157816	transcription start site region 157816	811 bp upstream
Tssr157817	transcription start site region 157817	1236 bp downstream
Tssr157818	transcription start site region 157818	1698 bp downstream