rs213336458 SNP Detail

Summary

• ID
  rs213336458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129269228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTACT AATGAAGGCA
  CAGCACTGTA TTTACCCTCA TTATGTATGC CACGAAGAGG TGCCTTCCGG GAAGCAGAAA
  GAAGCCACAC AGGGCACCAT AATCTTGTGC TTCCCAGCAT CTACCAGTGC AAGAAGTAAA
  TATCTGTTCT GTTGTTTTCT TCTAGACAGG GATTCCCTGT GTATGTAGCC CTGGTTGGCC
  Y
  GGAACTTGAT CTGTTGACCA GGCTGGCTTC CAAAACAGAG AGATCTGCCT GCTTCTGCTG
  GGATTAAAGG TATGCAACGC CACGGCCCAG TAATATCTGT TCCTTCTATG TGACCTGACC
  TTCGGTAATC TTAGTAGCAC ATATGGTCTA CAGGGTCTAA GATAGGAAAG TCTTAGAATG
  AAATGTTAGA ACACTTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312484	CHEV_4_129052679	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213336458					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129269228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1394 bp proximal
Rr377176	regulatory region 377176	within coordinates
Rr600213	regulatory region 600213	1410 bp distal
Rr600214	regulatory region 600214	757 bp distal
Rr600215	regulatory region 600215	1335 bp proximal
Tssr39144	transcription start site region 39144	89 bp downstream
Tssr43495	transcription start site region 43495	1108 bp upstream
Tssr43496	transcription start site region 43496	577 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	Intron