rs213336817 SNP Detail

Summary

• ID
  rs213336817
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115219086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCACAC AGCAGCGGGA
  AATGTTGGGC TGTCAAACGC AGGGAGAGCT GTAGAGAGTG GACCTGAAGG AGATTGCTTC
  CTCCCTCAGA GGGAGTCTGC CTATCTCAAG GAACAAAGAA TTATGGGTGA GGGGGGATGG
  GAGAAATGGA GGGGAGCAGA TTTGTAGTTC TGGCTTTCTT TTTAATCTGT GCAGTGTGAG
  W
  ATGTATGTGT GTGTTCTCTG TGTACACACG TGGTGTGTGT GGTCAGAAAA CAGCTTCCAA
  GAGTTGGGTC TCTCCTTCTA TCACGTGGGT CCTAGGTCAT CAGACTTAGC AGCAAGCCCC
  TTTACCCACT GACCCATCAG ATTTCCACCG TGCTTTCTTA TCTCACTAAA CCTGGACCTT
  ACAGCAAGCC CCAGGGATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862365	CHEV_11_115189574	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213336817					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115219086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	883 bp proximal
Otop2	otopetrin 2	within coordinates
Rr459849	regulatory region 459849	1265 bp proximal