rs213339859 SNP Detail

Summary

• ID
  rs213339859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTTCCAC CCCTAAGCCT ACCTGAGCCC TAGTAACCTA
  GACAGCCTCC CTAAGCCCTC TCCCAGCTTT CCGGCCCGAC CCAGGACACC TCTCTAGGGA
  Y
  GCTACTGTCA CCCCTCAGTC AAGGCTCCCA TCAAATTGAC CCCACTTTGG GCTTCTATCA
  CCACGCAGGC CTCCTACCGC ACTTGTAACC TGTGTAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135227	CHEV_7_31339896	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213339859					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1343 bp distal
Cpgi18810	CpG island 18810	280 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	564 bp downstream
Mir9769	microRNA 9769	1973 bp downstream
Tssr65780	transcription start site region 65780	1605 bp downstream
Tssr65781	transcription start site region 65781	1568 bp downstream
Tssr65782	transcription start site region 65782	83 bp downstream
Tssr65783	transcription start site region 65783	17 bp downstream
Tssr65784	transcription start site region 65784	within coordinates
Tssr65785	transcription start site region 65785	46 bp upstream
Tssr65786	transcription start site region 65786	64 bp upstream
Tssr65787	transcription start site region 65787	158 bp upstream
Tssr71789	transcription start site region 71789	189 bp upstream
Tssr71790	transcription start site region 71790	47 bp upstream