rs213345677 SNP Detail

Summary

• ID
  rs213345677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77739239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCCCTCA CCCCAAGTCT
  CAGGTCTAAG GTCACCATAG AAAGGCAAAT GGGAGCGTCG ACGCAGGACC TGATCCTCAG
  CCGGGAACCT ATCACCACCG GCCTCAGGAG GACCCCAGTC TTCCTTTGTC ACCTGTCTTC
  CTCCGTGGAG TCTGCGTTTC CCACGACTTC CATAAATGGC CTCCTATCAT TTTATCTTTC
  Y
  GCCTCCTTAT TTCGTGGTTC ACCACGCTGA GTGGCTCCCT AGGTCCACTG TGCCAGTTTC
  TATACTGTAA CCTGTTCGGC TCCGGCTGGG TTTTAATCTG GGACTCTAAC GGAAGGGCCA
  TGGGAGCGTT GTGCAGCAGC CTTGGGTGCA TACCCTGAAT GGCAGTGTCT GGAGCAGGGT
  AGGCTCCTTA TTACACCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380977319	MGP_WTSI_10_77366150	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213345677					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380977319	MGP_WTSI_10_77366150	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77739239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	within coordinates
Gm53590	predicted gene, 53590	79 bp upstream
Gm66732	predicted gene, 66732	21 bp upstream
Gm66819	predicted gene, 66819	6 bp downstream
Lrrc3	leucine rich repeat containing 3	869 bp upstream
Rr434596	regulatory region 434596	1019 bp distal
Rr434597	regulatory region 434597	880 bp distal
Rr434598	regulatory region 434598	within coordinates
Rr434599	regulatory region 434599	103 bp proximal
Tssr98252	transcription start site region 98252	944 bp upstream
Tssr98253	transcription start site region 98253	876 bp upstream