rs213353320 SNP Detail

Summary

• ID
  rs213353320
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68394298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTATC AACTTTCCCA
  CTTCTTTGCC CCATTATGAC AACCTACCCT CAGACTTGCC AACTTTAGAT GCCCCAGTAC
  AGGGGAACGC CAGGGCCAAA AAGGGGAAGT GGGTGGGTAG GGGATGGGGG TGGGTGGGTA
  TGGGAGACCT TTGGGATAGC ATTGAAAATG TAAACGAGGA AAATAACTAA TAAAAAAATA
  W
  AAAAAAAAAA GAAAATAAAG CATTGCAAAC AAATGATCAA ACAAAAAAAA AACCACCCAC
  AAAATCAAAG TCTTAAGGAA TTGTTTCTCT CTGAGGACAT GAGTGTGATG TCAGTCCAAA
  GACAACTTCA GTTGCCAAGA CGTAAGTTAG GACAAGTGGG GACCGAGTGC TTTAAAGAAA
  GGATATTGAA CGTGGACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss354348870	MGP_WTSI_2_68402011	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs213353320					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354348870	MGP_WTSI_2_68402011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68394298 () rs orientation: forward

Symbol	Name	Function Class
Gm49462	predicted gene, 49462	within coordinates
Gm74865	predicted gene, 74865	522 bp upstream
Gm74875	predicted gene, 74875	436 bp downstream
Rr44205	regulatory region 44205	98 bp distal
Rr64245	regulatory region 64245	315 bp distal
Tssr18024	transcription start site region 18024	1703 bp upstream
Tssr24417	transcription start site region 24417	1421 bp downstream
Tssr24418	transcription start site region 24418	1440 bp downstream
Tssr24419	transcription start site region 24419	1449 bp downstream