rs213354960 SNP Detail

Summary

• ID
  rs213354960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACGACTT TTGCCAACTT
  GACAATTGCT ATTGGATATA GGCGTGCCCA GCCCACTCTG GGCCTGGGCT GTATAAGAGG
  TAGCTGAACA AGCCGGGAGG CATGTGCTAG TAAACGGTTG TCCTCCATGG CTGGCTTGAG
  GCTTGGGTTC CTGCCTCAGT TTCCTTCAAC GGTGGGCTGT AACTTGTGAA GGGAAACAAA
  Y
  GGTTTCCTCC CCTAAGCTGG CTTTGGTCAG TGTTTTATCA CAGCAAAAAG CAAATTAGAA
  CGAATGGCCA CTGTCGATGG GTCATCCTTT TTAGAGCTGG TTTTGAAAAC AGGCTCCTTT
  CCACAAGTAA GGTACCTCAG GAGGAGACTC TCTCTACCTT GTCATGAAAC TCCCGAAGTA
  GCTGGCTAGC CAGGGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370876346	MGP_WTSI_7_29940013	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213354960					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370876346	MGP_WTSI_7_29940013	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854419 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	686 bp upstream
Cpgi18740	CpG island 18740	305 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1459 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1033 bp downstream
Rr400219	regulatory region 400219	1118 bp upstream
Rr644490	regulatory region 644490	766 bp distal
Rr644491	regulatory region 644491	196 bp proximal
Rr644492	regulatory region 644492	708 bp proximal
Rr644493	regulatory region 644493	1179 bp proximal
Rr644494	regulatory region 644494	1202 bp proximal
Rr644495	regulatory region 644495	1327 bp proximal
Tssr65599	transcription start site region 65599	649 bp upstream
Tssr65600	transcription start site region 65600	677 bp upstream
Tssr65601	transcription start site region 65601	750 bp upstream
Tssr71610	transcription start site region 71610	603 bp downstream
Tssr71611	transcription start site region 71611	628 bp downstream
Tssr71612	transcription start site region 71612	723 bp downstream
Tssr71613	transcription start site region 71613	942 bp downstream
Tssr71614	transcription start site region 71614	969 bp downstream
Tssr71615	transcription start site region 71615	1178 bp downstream