rs213364363 SNP Detail

Summary

• ID
  rs213364363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130551697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGCTATAG GCTCTGAGAA TCATTGATGG
  GGACAAGGGT GTCACAGGCC TCAAGTCTAC CATCCTGTCT CTGTTATCCT TAGAAGTGGG
  GCTATTTCAG AGGTATTTAA AATGTGGGGG GTCACCATTC TCTTTGTGAA AGGGCCATGC
  Y
  GAAGGAGCTC TCAGCACCAA AGGGACACAG CTTGGGTAGT GACTGGCCGG CACCCCTCCA
  CCATCTCTCA CATGTCCCAG GTTCAGTCAG GTGACCACAT GGTTTCTTTC TGTTTCATTT
  TAAAGAATCC CTGACAGCAG AGTTGGGCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318870	CHEV_4_130380301	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213364363					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130551697 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	8 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39280	transcription start site region 39280	1718 bp downstream
Tssr39281	transcription start site region 39281	1660 bp downstream
Tssr39282	transcription start site region 39282	1339 bp downstream
Tssr39283	transcription start site region 39283	1259 bp downstream
Tssr39284	transcription start site region 39284	1051 bp downstream
Tssr39285	transcription start site region 39285	987 bp downstream
Tssr39286	transcription start site region 39286	920 bp downstream
Tssr39287	transcription start site region 39287	906 bp downstream
Tssr39288	transcription start site region 39288	862 bp downstream
Tssr39289	transcription start site region 39289	741 bp downstream
Tssr39290	transcription start site region 39290	734 bp downstream
Tssr39291	transcription start site region 39291	588 bp downstream
Tssr39292	transcription start site region 39292	505 bp downstream
Tssr39293	transcription start site region 39293	1480 bp upstream
Tssr39294	transcription start site region 39294	1635 bp upstream
Tssr39295	transcription start site region 39295	1801 bp upstream
Tssr39296	transcription start site region 39296	1827 bp upstream