rs213373396 SNP Detail

Summary

• ID
  rs213373396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143203186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTTTCTCT GGCTACCCGC TTGGCCATTC
  CCCTGCCTCT GCTTCACCTC CTCAATCCCC CAACTCTGGA CCACTTAAGA GCAGACGAAG
  TTCTGAAGTG TTGGTTGGCG ATGCCCAGGC TGATGGCACA GCCCGCCATC AGTTCACCGC
  Y
  GGCAGTAGCT TTCCTCTGCA GTCCGGGGAT CCGGTGCCCA GAGCGAGTCT CAGCTCCGCA
  GGGCCATATC TACTCACCTG CAAGGGCAGA TTcagcagca gcagcagcag cagcagcagc
  agcCGCCGCC AAAGGAACCA GCGACTCAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322477207	CHEV_7_150835354	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213373396					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143203186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	within coordinates
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	within coordinates
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	within coordinates
Tssr75968	transcription start site region 75968	147 bp downstream
Tssr75969	transcription start site region 75969	165 bp downstream