rs213378542 SNP Detail

Summary

• ID
  rs213378542
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88202658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTTGGG CGTTTTTGGT
  AAGGACCCAA CTAAGGAGCT CCCTCTAGGA CATTCCCTGA GAGTCCCCAA GCTGGTCCAG
  CATCGGTACA CATGGCTTGC TGTGGACTAT GATGAAGAAA TAGCAGACAA GAGCCAGGAG
  GTGGAAGAAA CACTTCTCAG TTTATCTTCA CACAGGAGGG GTAAGGGCAG AGGAGGAGGT
  C
  ATCCCATCAC AGAGCACACC GGCCTCCGGG CTCTCTGGCG CTGGGATGCA GTCCCACCAA
  CACACTAGAG TAAAGCAGGA AGGCGGCAAA CCTGATGGCA AATACCTGAG TGTATTCCTT
  GTCTTCCTTC TTCATCAGCT TTCCTCCCCA AACTCTCAAC CCTTAAGAAA CAAAGGTGAC
  AATTGAAGAA GCAATCTGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350399367	MGP_WTSI_1_90171511	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213378542					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399367	MGP_WTSI_1_90171511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88202658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1944 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	857 bp distal
Rr29783	regulatory region 29783	542 bp proximal
Tssr12871	transcription start site region 12871	797 bp upstream
Tssr12872	transcription start site region 12872	752 bp upstream