rs213381831 SNP Detail

Summary

• ID
  rs213381831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64697491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACTCC CTCCTGCCCC
  ACTACCCTAG CATTTCCCTA CACTAGGGCA TCAAGCCTTC AGGACCAAGG CCCTCCCCTC
  CCATCGATGC CCGACAAGGC CAAACATCAG ATCAAGAGGG AACGTTTAAG ATCTCCCGTC
  ATCCTGCCAT CCTTGCTCAA ATCTAAGAGC ATTTGTGGAC AAACCACACA TATAGTGACC
  R
  CTAAGACTTG ATGTTTCTGT CATGTAAAAA AACAGTGCAG ACACCTGTTA TTTGTGGTTT
  AATTCTGTTA TTTGTAGCTT TTATATGGAA ACAAATTCAG TGAAATTCAA GCAAGGGAAG
  GAGAGTTACT CTTAGCCCCA TATTATATTA TACCTGTTCC TAACTTGAAA AAAAATTATA
  ATCATATCAA ATTAGGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss377851604	MGP_WTSI_9_64638016	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs213381831					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377851604	MGP_WTSI_9_64638016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64697491 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	477 bp downstream
Rr681316	regulatory region 681316	355 bp distal
Rr681317	regulatory region 681317	486 bp proximal
Rr681318	regulatory region 681318	1055 bp proximal
Rr681319	regulatory region 681319	1858 bp proximal
Tssr2909	transcription start site region 2909	585 bp downstream
Tssr85622	transcription start site region 85622	552 bp downstream
Tssr85623	transcription start site region 85623	532 bp downstream
Tssr85624	transcription start site region 85624	747 bp upstream
Tssr90157	transcription start site region 90157	613 bp downstream