rs213386360 SNP Detail

Summary

• ID
  rs213386360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79516409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCCAAG TGTACATGAT
  AAAACCTGTC TCAACTGGAA GCACATTTCT CAGCATCTTC TATCTCCTGG AAGGTCTCAG
  TTTTCCAGAA TGTCATAGTT TTCAGAGTCT TATGGGAAGA AATGGTCCCA CAATCCCTGC
  CCAGACCTCC TAGCCCTGTT CCTAGGATGT GCCCACGACT AAGGCTTATC ATGAACCATT
  Y
  CCTGCAGCTT GGGGTGGGAG CAGCCAGAAT GTTCTGACTG GATGTCCCCT TGCTGTGAGG
  AGACCTGGAT TATCCTCATC AGATGACCAA GGTCTGTGAC TGGGGACTTG GATCATGACA
  TCCATGTCCT AACATGTCAA GGTAGATGAC CCCAGTCACC AGAAGCCAGG CCAACACCCT
  TCCCAGATGC TCAATACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381007684	MGP_WTSI_10_79143320	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213386360					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381007684	MGP_WTSI_10_79143320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79516409 () rs orientation: forward

Symbol	Name	Function Class
Cdc34	cell division cycle 34	1620 bp upstream
Cpgi1800	CpG island 1800	698 bp proximal
Gm67172	predicted gene, 67172	134 bp upstream
Rr402019	regulatory region 402019	1079 bp upstream
Rr434866	regulatory region 434866	within coordinates
Rr434867	regulatory region 434867	1000 bp proximal
Rr434868	regulatory region 434868	1130 bp proximal
Rr434869	regulatory region 434869	1840 bp proximal
Tssr3269	transcription start site region 3269	439 bp upstream
Tssr3270	transcription start site region 3270	1250 bp upstream
Tssr94367	transcription start site region 94367	1209 bp upstream
Tssr94368	transcription start site region 94368	1572 bp upstream
Tssr94369	transcription start site region 94369	1594 bp upstream
Tssr94370	transcription start site region 94370	1657 bp upstream
Tssr94371	transcription start site region 94371	1731 bp upstream
Tssr94372	transcription start site region 94372	1795 bp upstream