rs213388577 SNP Detail

Summary

• ID
  rs213388577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121848141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC CCAGATCCAT TTTTCTCTCT
  Y
  TTTTTTTTAA AGTCATATTT ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321668344	CHEV_5_122160087	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213388577					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121848141 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	156 bp downstream
Atxn2	ataxin 2	1653 bp upstream
Cpgi16531	CpG island 16531	951 bp proximal
Gm71700	predicted gene, 71700	1752 bp downstream
Rr619651	regulatory region 619651	330 bp proximal
Rr619652	regulatory region 619652	1377 bp proximal
Rr619653	regulatory region 619653	1581 bp proximal
Tssr48591	transcription start site region 48591	1707 bp upstream
Tssr48592	transcription start site region 48592	1830 bp upstream
Tssr48593	transcription start site region 48593	1961 bp upstream
Tssr48594	transcription start site region 48594	1990 bp upstream
Tssr53053	transcription start site region 53053	1377 bp downstream