rs213390981 SNP Detail

Summary

• ID
  rs213390981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:6239836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTACTA ACAGAGAACT
  GGCTGGGCAG TGGTGGCACA GGCCTTGAAT CCCGACTCTC AGGAGGCAGA GGCAGGCGGA
  TTTCTGAGTT CAAGACCAGC CTGGTCCAGT TCCAGGACAG CTAGGACTAT ACAGAGAAAT
  CCTGTCTCGA AAAAGAAAAA GAAAAAAACA AAACGAAACA AAACACCCCC CAAAGAACTG
  R
  CCTGATAGTC TTCACACAGC AGTAATAGTT TTTTTTCTAC CAAAACCCTA CCGGGAGGAT
  ACACTACTAA CACATTCAAT TTCCGAAAAC TCAACTTTGA AAACCTTCAC ATTAACACAC
  CCTCTAGAGA ACTTCAGTAC TATCTTCAGG CTAAAATGTT TTCACTCATC AATGGCCAGT
  CTCCTGTGAC CTCTCTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520784	CHEV_18_6239834	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213390981					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6239836 () rs orientation: forward

Symbol	Name	Function Class
Gm41664	predicted gene, 41664	843 bp upstream
Kif5b	kinesin family member 5B	Intron
Rr533488	regulatory region 533488	1483 bp distal
Rr533489	regulatory region 533489	761 bp proximal
Rr533490	regulatory region 533490	1677 bp proximal
Tssr152353	transcription start site region 152353	1328 bp downstream
Tssr152354	transcription start site region 152354	1402 bp downstream
Tssr152355	transcription start site region 152355	1635 bp downstream
Tssr152356	transcription start site region 152356	1650 bp downstream