rs213402707 SNP Detail

Summary

• ID
  rs213402707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93729747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCGCCCGC ACAGCACCGG
  TCAACTTGCC AGGTTCCCGC CAATGTTAGA TGCAGCAGAA GCCCGGCGTG CACGGAAGCC
  CTGCCCTCTT CCGGTTGGAA AACGAATTCT GTGGCCTGCG GGGAACAGCT TCCGGACGTG
  ACGTAATCTA GGCCCGGGAG TCTGCAGTTT AGCGAGCGCC AACTCGCGGA ACTTCCGTTC
  R
  CCGCTCCCGA AGAGCACCAA TCTTAAGGAC TGTGGTTGCG CAGGCTCTGG TCACGTGGAA
  GTTCGAGACC TGTAACGGAA TCAAATTTTT ATGCCCCTAA GCGCGCTACT GAAGGGTTCT
  AAAAGTTTCT TATCACACAC ACACCTGCGC GCGTACAGGA GCCATGTGAT GATCAGGCTC
  TGAAAGGAGT TAAGGATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350526626	MGP_WTSI_1_95698602	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213402707					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350526626	MGP_WTSI_1_95698602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93729747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	within coordinates
Cpgi609	CpG island 609	1410 bp proximal
Dtymk	deoxythymidylate kinase	91 bp upstream
Gm57164	predicted gene, 57164	1138 bp downstream
Gm70929	predicted gene, 70929	within coordinates
Ing5	inhibitor of growth family, member 5	1940 bp upstream
Rr29859	regulatory region 29859	within coordinates
Rr366972	regulatory region 366972	within coordinates
Rr396180	regulatory region 396180	1671 bp upstream
Tssr8200	transcription start site region 8200	126 bp upstream
Tssr8201	transcription start site region 8201	1920 bp upstream
Tssr13052	transcription start site region 13052	80 bp upstream
Tssr13053	transcription start site region 13053	1745 bp downstream