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rs213402707 SNP Detail
Summary
  • ID
    rs213402707
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:93729747 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATCGCCCGC ACAGCACCGG
    TCAACTTGCC AGGTTCCCGC CAATGTTAGA TGCAGCAGAA GCCCGGCGTG CACGGAAGCC
    CTGCCCTCTT CCGGTTGGAA AACGAATTCT GTGGCCTGCG GGGAACAGCT TCCGGACGTG
    ACGTAATCTA GGCCCGGGAG TCTGCAGTTT AGCGAGCGCC AACTCGCGGA ACTTCCGTTC
    R
    CCGCTCCCGA AGAGCACCAA TCTTAAGGAC TGTGGTTGCG CAGGCTCTGG TCACGTGGAA
    GTTCGAGACC TGTAACGGAA TCAAATTTTT ATGCCCCTAA GCGCGCTACT GAAGGGTTCT
    AAAAGTTTCT TATCACACAC ACACCTGCGC GCGTACAGGA GCCATGTGAT GATCAGGCTC
    TGAAAGGAGT TAAGGATAGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss350526626 MGP_WTSI_1_95698602 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A A G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213402707 SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A A G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss350526626 MGP_WTSI_1_95698602 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:93729747 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi608 CpG island 608 within coordinates
Cpgi609 CpG island 609 1410 bp proximal
Dtymk deoxythymidylate kinase 91 bp upstream
Gm57164 predicted gene, 57164 1138 bp downstream
Gm70929 predicted gene, 70929 within coordinates
Ing5 inhibitor of growth family, member 5 1940 bp upstream
Rr29859 regulatory region 29859 within coordinates
Rr366972 regulatory region 366972 within coordinates
Rr396180 regulatory region 396180 1671 bp upstream
Tssr8200 transcription start site region 8200 126 bp upstream
Tssr8201 transcription start site region 8201 1920 bp upstream
Tssr13052 transcription start site region 13052 80 bp upstream
Tssr13053 transcription start site region 13053 1745 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory