rs213405798 SNP Detail

Summary

• ID
  rs213405798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73072595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG CCTCGTCACC CGTGTTCCCC
  R
  CGGAGTCCCA GGTGCCACCC CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708333	CHEV_8_74842650	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213405798					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73072595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Gm63983	predicted gene, 63983	892 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	311 bp upstream
Rr382265	regulatory region 382265	1078 bp downstream
Rr400967	regulatory region 400967	75 bp upstream
Rr665300	regulatory region 665300	903 bp distal
Rr665301	regulatory region 665301	402 bp distal
Rr665302	regulatory region 665302	within coordinates
Tssr2606	transcription start site region 2606	149 bp downstream
Tssr77968	transcription start site region 77968	130 bp upstream
Tssr77969	transcription start site region 77969	142 bp upstream
Tssr77970	transcription start site region 77970	302 bp upstream
Tssr77971	transcription start site region 77971	782 bp upstream
Tssr77972	transcription start site region 77972	832 bp upstream
Tssr77973	transcription start site region 77973	869 bp upstream
Tssr77974	transcription start site region 77974	925 bp upstream
Tssr77975	transcription start site region 77975	1075 bp upstream
Tssr77976	transcription start site region 77976	1314 bp upstream