rs213408526 SNP Detail

Summary

• ID
  rs213408526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51447058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCCCCC CACTAACGCG
  TCTCCGCTTA CGTCACGCCG TTACGTAAAC GCCCTAACCG CCGCCAATGG CGGGAAGGGC
  CTACACTCTC CTTACGCCAA GTACGTGACA CTCCCCCTTT AGGTACAGCG GGACTGCTTT
  ACATCACTTG CGCAACTGTG TTCCGTGAAT TGCGGAAGGC TCGCGCTCGG CGTGTTACTA
  Y
  GTCCGGAACT AGGTCCGGCC CCCACCTCCG CGTAGGGAGC GGAGAAACGG TCGCGCAGTT
  TGAAATAACG CCGTCGGGAG GGGCTTAGGC CGGCGCTGGG GCGTGCGGCC CTCTCCACCC
  AAGCGTGCTC TCTGCAGCTA CGCCTTTGCC AAGCCCGTCC GCACAAATAT TCTCGAACCA
  CACAAATATT TCTACACGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292353	MGP_WTSI_6_51420077	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213408526					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292353	MGP_WTSI_6_51420077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51447058 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	538 bp upstream
Cpgi17402	CpG island 17402	within coordinates
Gm67572	predicted gene, 67572	27 bp downstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	184 bp upstream
Rr379347	regulatory region 379347	within coordinates
Tssr56443	transcription start site region 56443	616 bp downstream
Tssr56444	transcription start site region 56444	105 bp upstream
Tssr56445	transcription start site region 56445	261 bp upstream
Tssr56446	transcription start site region 56446	327 bp upstream
Tssr56447	transcription start site region 56447	343 bp upstream
Tssr56448	transcription start site region 56448	355 bp upstream
Tssr56449	transcription start site region 56449	416 bp upstream
Tssr56450	transcription start site region 56450	432 bp upstream
Tssr56451	transcription start site region 56451	469 bp upstream
Tssr56452	transcription start site region 56452	530 bp upstream
Tssr56453	transcription start site region 56453	555 bp upstream
Tssr60946	transcription start site region 60946	1609 bp upstream
Tssr60947	transcription start site region 60947	224 bp upstream
Tssr60948	transcription start site region 60948	201 bp upstream
Tssr60949	transcription start site region 60949	951 bp downstream