rs213410011 SNP Detail

Summary

• ID
  rs213410011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGCTGG GAGCCCAGAA
  TGCTCAGATG CCCAGTGATG AACAGGAGAC AAGAGATAGT TTGAGTTCGT GGTTACCCTC
  CAGAGATCTT CGAGGCAGTA ACCCCTGCAC AGACATCAGA CACATCCTAC CTTACATCTG
  TACAGCCCTG CTCCAAAGGC CGTGTGGCTG CTTATTCCAT CCCCTCTGTG ACGTTCTGTA
  W
  GAGAGGATGT GGGATGTTAC ATTCTCTTCC TGTTTAAGCT TAGCTTTACT GGCTCCTCCT
  GCTCGTGTCT TCCTCTAGAG AAGTCTCTGG CTGCGAAGCT GAGCACAAGT TCCTATTCCA
  GCATGTTTCC ACATCGCGCA GTCAGCTGAC AGCCACCCAG GCCACTTCCT GACACCCAAC
  AGCCCTGTGC CACCACTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376302986	MGP_WTSI_8_124316160	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213410011					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376302986	MGP_WTSI_8_124316160	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518999 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1177 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	71 bp upstream
Tssr79824	transcription start site region 79824	189 bp upstream
Tssr79825	transcription start site region 79825	218 bp upstream
Tssr83237	transcription start site region 83237	71 bp upstream
Tssr83238	transcription start site region 83238	50 bp upstream
Tssr83239	transcription start site region 83239	28 bp upstream
Tssr83240	transcription start site region 83240	2 bp downstream
Tssr83241	transcription start site region 83241	75 bp downstream