rs213415203 SNP Detail

Summary

• ID
  rs213415203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117939005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAACC TTTAAGGCTT
  TTGATACATG CTTTTAAATT GCCTCAGAAG GAGAAGTTTC TGGCAGGATG GTACCCCCCC
  CCCCGCACCC CGCACCACCC CCCCCCCCCC CCCCCGCCAG CAATCAGTTG AAACCATGTA
  TCTGGTTTTA TCTGGTTGTC ACTATCACCA TTCAAAATTG TGCGGGGGTT GGGGGGAGGA
  Y
  ATGCCGTCTC GTTTCTACTT TATTTCCACT TGCATGACTT GATTACATTA TGGAACCATG
  TCAGTCGTCT GTGTAAGCAG GGGGGTTGCT GAGGAGGGAG AAAGGCATGG TCTGAGCCAG
  TCTCCAGGGT GAGGGGTGGA GCAGATCTTT GTCAGCCCAC ACGCTGAGGT TCCCACAGCT
  CAAAGCTTCC TCCCTCTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323501464	CHEV_10_117540156	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213415203					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117939005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	98 bp proximal
Gm66186	predicted gene, 66186	within coordinates
Gm66289	predicted gene, 66289	1893 bp upstream
Rr369079	regulatory region 369079	111 bp upstream
Tssr3367	transcription start site region 3367	1130 bp downstream
Tssr99497	transcription start site region 99497	141 bp downstream