rs213424284 SNP Detail

Summary

• ID
  rs213424284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgactatat tgtagaagag gctgactgga
  agctatgatt ctcctgcctc cgtcttctga gtgctggccg gacaggcatt gctaccaagc
  attgccgtgc tacgtTCTGC TCAGTGTCTG CTGCCCAAAC TGAATAGATG CCTCAGTGAG
  R
  AAATATACAA AAACTTGTGG GCAGACTCTC CCTGATCTGG CATCATTGGA GGACTTTCCA
  AAACTTTAGC ACACCAACAA TAGCATATAA AAGCTGAGAA CTGCATATTT TCATTAATTA
  GTTGACAAAg tatgtgtgtg tgtgtgtgtg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934555	CHEV_6_122801829	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213424284					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828770 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	879 bp proximal
Tssr58711	transcription start site region 58711	1302 bp downstream
Tssr58712	transcription start site region 58712	1221 bp downstream
Tssr58713	transcription start site region 58713	1153 bp downstream
Tssr58714	transcription start site region 58714	1124 bp upstream
Tssr62986	transcription start site region 62986	1884 bp upstream
Tssr62987	transcription start site region 62987	1758 bp upstream
Tssr62988	transcription start site region 62988	1692 bp upstream
Tssr62989	transcription start site region 62989	1532 bp upstream
Tssr62990	transcription start site region 62990	1479 bp upstream
Tssr62991	transcription start site region 62991	1450 bp upstream
Tssr62992	transcription start site region 62992	1400 bp upstream
Tssr62993	transcription start site region 62993	1307 bp upstream
Tssr62994	transcription start site region 62994	1130 bp upstream
Tssr62995	transcription start site region 62995	1076 bp upstream
Tssr62996	transcription start site region 62996	939 bp upstream
Tssr62997	transcription start site region 62997	873 bp upstream
Tssr62998	transcription start site region 62998	802 bp upstream
Tssr62999	transcription start site region 62999	749 bp upstream
Tssr63000	transcription start site region 63000	726 bp upstream
Tssr63001	transcription start site region 63001	710 bp upstream
Tssr63002	transcription start site region 63002	1037 bp downstream