rs213439939 SNP Detail

Summary

• ID
  rs213439939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115651752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAACCAA ACCAAAAGAA CCTCAGTGGT
  TTTCAGTGGT TCACAGCACC AAAGATTTGG ACACTGCTCC TGATGTCTTC ACTTCCAAAT
  AGCCACTTCA GCATAAGCCT TAATCGAAGG AGCTATTTTA GAAGAAGAAT GTTCACAGGG
  Y
  TGCAGACGTC TTAACAAAGC TGCAACCTGG GGACTCTGTC CAAAGAAAAG AGTCTACTAC
  ATAAATAGGG TTAATTAAAA ATACTTTCAT GCTACACTTC TTCAGGTGCT TTCTATAATC
  TGCCAATTTC TGTCTGTTTG GGGAATGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916361	CHEV_6_115624809	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213439939					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115651752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	889 bp proximal
D830050J10Rik	RIKEN cDNA D830050J10 gene	1177 bp upstream
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr379970	regulatory region 379970	1574 bp downstream
Rr399847	regulatory region 399847	1575 bp upstream
Rr637015	regulatory region 637015	195 bp distal
Rr637016	regulatory region 637016	363 bp proximal
Rr637017	regulatory region 637017	1163 bp proximal
Rr637018	regulatory region 637018	1215 bp proximal
Rr637019	regulatory region 637019	1834 bp proximal
Tssr58320	transcription start site region 58320	1153 bp upstream
Tssr58321	transcription start site region 58321	1192 bp upstream
Tssr58322	transcription start site region 58322	1923 bp upstream
Tssr62522	transcription start site region 62522	1080 bp downstream
Tssr62523	transcription start site region 62523	1681 bp downstream
Tssr62524	transcription start site region 62524	1810 bp downstream
Tssr62525	transcription start site region 62525	1832 bp downstream